PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G020235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YB | ||||||||
Protein Properties | Length: 171aa MW: 19209.1 Da PI: 4.3198 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 74.8 | 1.3e-23 | 27 | 110 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf +y+e++ + HL.SW.v1.0.G020235.1 27 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCGREEKRTIAPEHVLKALEVLGFSEYIEEVYAA 110 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-38 | 24 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.9E-34 | 28 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-21 | 30 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSLFIFMIFL QLGSLMMDPM DIVGKSKEDA SLPKATMTKI IKEMLPPDVR VARDAQDLLI 60 ECCVEFINLI SSESNEVCGR EEKRTIAPEH VLKALEVLGF SEYIEEVYAA YEQHKVETMD 120 LRSGKWSNGA EMTEEEALAE QQRMFAEARA RMNGGMATPK QPEPDQSLEN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-34 | 28 | 149 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030766.1 | 1e-104 | protein Dr1 homolog | ||||
Swissprot | P49592 | 9e-90 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | W9SUR9 | 1e-104 | W9SUR9_9ROSA; Protein Dr1-like protein | ||||
STRING | XP_010110772.1 | 1e-105 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 1e-93 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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