PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018076.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 479aa    MW: 52717.1 Da    PI: 8.2796
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018076.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322e-41181258178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +CqvegC+ dls+ak+yhr+h++Ce hsk+p v+v g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  HL.SW.v1.0.G018076.1 181 RCQVEGCNLDLSSAKDYHRKHRICENHSKSPRVIVGGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 258
                           6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-34176243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.009179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39180261IPR004333Transcription factor, SBP-box
PfamPF031104.0E-32182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEWNSKPSLL WDLENLFEFD AKATENPKKL QLTDCDIEGD RGISSGSLHS PGEGGGSAGS  60
GSDLGHASSR SSISASINSS SIGESKTSKF TLDGFEPFSK ELMSKNEANK AQQYGSSPTP  120
DISAGSGEPL LSLKLGKRMY FKDICSENNA KNSSNSVVSM SSATTVKRNK SSCQGNLSPP  180
RCQVEGCNLD LSSAKDYHRK HRICENHSKS PRVIVGGVER RFCQQCSRFH GLSEFDEKKR  240
SCRRRLSDHN ARRRKPQPEA VRLNPARLSS LYDETQKMSL VFDQTQRLYS RHANLTWDSH  300
DSSKFGHTRE YLSRPAKTGA AAGQLHLSNN DQMSNSITML YQDPNGLTPN KGTVPEVHHP  360
GFEETAVSSD VNTSQDLHRA LSLLSTSSWG SRETKPVSLD TLNNSTNNSS MVQTAVHPIC  420
QGLPMASEYW QTQHQQPTTD AASSPLSHHQ RSNGSSQFQD LHLFKSPTES GFYSYQFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102696.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025420.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025421.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025422.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A2P5C1U90.0A0A2P5C1U9_TREOI; SBP-box transcription factor
STRINGXP_010102696.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-69squamosa promoter binding protein-like 2