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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G016555.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
ERF |
| Protein Properties |
Length: 360aa MW: 39669.2 Da PI: 7.1179 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G016555.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.2 | 1.3e-20 | 165 | 214 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g
HL.SW.v1.0.G016555.1 165 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 214
59******9.**********965...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MAAAMDFYST RPFQSDPLRG ELMEALEPFM KSDSPTIQSP EFSSSTSPYL PSSSPSSSSY 60
LSFSSSVQTQ PGFFQDGCST STTQVFSNGF SSQNLGFEQQ QPGLIGLNSL TPSQIHQIQS 120
QIQFQNHHQP QSHLGFQPNH HGLRFLGPNP IPMKQVGSPP KPTKLYRGVR QRHWGKWVAE 180
IRLPKNRTRL WLGTFDTAEE AALAYDRAAF KLRGDFARLN FPHLRHQGSA ELGDFKPLHS 240
SVDAKLQAIC QNLAESQTQG KKKAEKSTTT AASKRSAAAA KKSSPAPVVY QESEICLKAE 300
ISFSSPAMTE SDGSAGSSPL SDLTFPDQVE SQWEYTVPEN HMLEKYPSEI DWASIYLDS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
XcisClique: analysis of regulatory bicliques.
BMC Bioinformatics, 2006. 7: p. 218
[PMID:16630346] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Iwase A, et al.
WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
J. Plant Res., 2015. 128(3): p. 389-97
[PMID:25810222] - Ikeuchi M, et al.
PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
Nat Plants, 2015. 1: p. 15089
[PMID:27250255] - Iwase A, et al.
WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
Plant Cell, 2017. 29(1): p. 54-69
[PMID:28011694]
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