PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G016390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRF | ||||||||
Protein Properties | Length: 422aa MW: 46467.9 Da PI: 10.6904 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.5 | 5.4e-24 | 110 | 153 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs++v+ ++k+CE H+hrgr+rsrk +e HL.SW.v1.0.G016390.1 110 DPEPGRCRRTDGKKWRCSKNVVHDQKYCEQHMHRGRQRSRKLVE 153 79***************************************987 PP | |||||||
2 | WRC | 67 | 2.5e-21 | 301 | 337 | 2 | 38 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 epgrCrRtDGKkWRC+r+v++++k+C rH+hrg ++ HL.SW.v1.0.G016390.1 301 LEPGRCRRTDGKKWRCRRDVIPDQKYCARHMHRGAKK 337 59********************************876 PP | |||||||
3 | QLQ | 34.5 | 6.4e-13 | 45 | 79 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+++Ql +Lk+Q l+y ++++++P+P +Ll++i+k HL.SW.v1.0.G016390.1 45 FSWDQLLQLKHQTLIYSHIVSGLPIPLRLLAPISK 79 9********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.0E-4 | 43 | 79 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 15.918 | 44 | 79 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-8 | 45 | 77 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.565 | 110 | 154 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.9E-21 | 111 | 153 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.888 | 300 | 344 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.5E-19 | 302 | 340 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MDFQTNPSPH SGVLRVRKRS EKEWTVVMHG DGGKPWIKRE SNCGFSWDQL LQLKHQTLIY 60 SHIVSGLPIP LRLLAPISKT LLPPLSTSIF NPYPFTGFSP RGFHFKNMVD PEPGRCRRTD 120 GKKWRCSKNV VHDQKYCEQH MHRGRQRSRK LVEVAEIGTS LSNTKMPDKS ISQSLQNSNS 180 NIPVSVGLQL MTTLSSNITS VSHANTTPSS SFSTKRVTNV IAPCIATTNT AAITKSNKNV 240 GNAGNDVGDK YFGTIGRSNN NNIHVGRHIS QGLGFSPKSV LHLQVIRRNG LYTDYRNGIE 300 LEPGRCRRTD GKKWRCRRDV IPDQKYCARH MHRGAKKLVK VFPPLPITTA SSAATDSAPR 360 LPSTAISCRV DPVSPDTKLS ISIQASPQLT NIGEKSDSST SSDTTISDTS IAAYTITKLP 420 A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092861.2 | 1e-142 | growth-regulating factor 9 | ||||
TrEMBL | A0A2P5AMM3 | 1e-146 | A0A2P5AMM3_TREOI; Growth-regulating factor | ||||
STRING | XP_010092861.1 | 1e-140 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9228 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 5e-41 | growth-regulating factor 9 |