PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015515.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 719aa    MW: 78465.7 Da    PI: 8.639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015515.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07316336526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C+ Gd+C +aHg
  HL.SW.v1.0.G015515.1 316 PCPEFRK-GSCQKGDSCEYAHG 336
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.23E-1377202IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-1579231IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.708123203IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.71123147IPR002110Ankyrin repeat
SMARTSM002485.4E-4123153IPR002110Ankyrin repeat
PfamPF127962.1E-8123190IPR020683Ankyrin repeat-containing domain
CDDcd002042.16E-12125221No hitNo description
SMARTSM002480.08158190IPR002110Ankyrin repeat
PROSITE profilePS500889.003158193IPR002110Ankyrin repeat
SMARTSM003564.0E-5311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544311338IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5316336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4316337IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.503346370IPR000571Zinc finger, CCCH-type
SMARTSM0035644346369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKELRRKVTL SSNLLAPSNS SLGIYKDPSS IFWLLKLLQT RRLLGMCSGS KNKVNNNPSK  60
VIMERDFPKK NDGVFSKCSV LLELSASDDL EAFRSKIEEK GINVDQTGFW YGRRIGSKKM  120
GFEERTPLMI AAMFGSAKVL KYIIESGKVD VNRACGSDQV TALHCATSGA SSSSLEAVKL  180
LLDASADVDL VSANGSKAID LLAPGFKGPC SSRRKAMEML LRGETNSVTE DEEDQQKVGS  240
PLASREGAEK KEYPIDVSLP DINNGMYGSD DFRMYSFKIK PCSRAYSHDW TECPFVHPGE  300
NARRRDPRKY PYSCVPCPEF RKGSCQKGDS CEYAHGVFES WLHPAQYRTR LCKDETGCTR  360
KVCFFAHKHD ELRPVYASTG SAMPSPRSLG VSAADMATLS PLALGPSSLP LPATSTPPMS  420
PMANSSSPKN GGLWQNKANH TPPALQLPGS RLKTALCARD LGLEMEMLGL ESHANQQQQF  480
LLDEISRLSS PSYSKQSNLD DLFGSLDPSV LSQMQGFSLK ASTQTQLQSP TGHQIRQNMN  540
QLRGSYPTTM SSSPVRKPTT FGFDSAGSMA AAVMNSRSSA FAKRSQSFID RGAATHLGYT  600
TAANSASMMS SSSLSDWSSP NGKLDWAVQG DELNKLRKSA SFGFRNSNGG TATAALRPST  660
IDEPDVSWVN SLVKDVSTER SGLFDAGKQQ HYNLNKGVHE VLPPWVEQLY IEQEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650096.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5E0C20.0A0A2P5E0C2_PARAD; Transmembrane protein
STRINGXP_008233766.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein