PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015190.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HB-other
Protein Properties Length: 360aa    MW: 40243 Da    PI: 8.2277
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015190.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.52e-1234692257
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          + yps++ r+eL+kkl Lt+rq ++WF+ rR k+kk
  HL.SW.v1.0.G015190.1 34 EAYPSETIRAELSKKLALTDRQLQMWFCHRRLKDKK 69
                          57********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00281874IPR001356Homeobox domain
PfamPF000466.9E-103469IPR001356Homeobox domain
SuperFamilySSF466891.2E-83470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-103569IPR009057Homeodomain-like
PROSITE profilePS5007112.1473670IPR001356Homeobox domain
CDDcd000863.37E-73670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEAASEEENR IKNDHNVNNK INSSNEGQSK PKLEAYPSET IRAELSKKLA LTDRQLQMWF  60
CHRRLKDKKE GGPAKKQRKM VAAMPESPPI DELRVGAEPG SDYGSGSGSG SSPFGPSAEL  120
RNVTSRSLGD DMPMGRRYYE PRQSKMELRA IAIVEAQLGE PLREDGPVLG IEFDSLPPDA  180
FGAPIVAEQQ KRSGHRYEGK SYDRHDAKSN KATPRALHEY PFLPDPSSAH NDVYGQVSQP  240
HIHNSANEQL PRSQGHGSRV RLSSGPDKQG IPFPSPSVDD TSLPKDSFTN IRVNPHTSDN  300
PIISPENTYV LPDGQICPNE ALLRMERKRK IEEARIAKEA EIQEIRMRKE LEKQENLKKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16269RRLKDKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031043.11e-143homeobox-DDT domain protein RLT1 isoform X1
RefseqXP_024031044.11e-143homeobox-DDT domain protein RLT1 isoform X1
TrEMBLA0A2P5CI271e-165A0A2P5CI27_TREOI; Octamer-binding transcription factor
STRINGXP_010111176.11e-139(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.14e-47homeobox-1