PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015017.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 658aa    MW: 74743.2 Da    PI: 6.8753
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015017.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.72.5e-25190277190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA e+GF vr+ k  +  +n+ i kr+f Cs+eg+++++ +++++++ +r+etrtgC+a+++++ + dgkw++++++leHnHel
  HL.SW.v1.0.G015017.1 190 NFYKKYAGEIGFAVRRGKVVRL-TNRAIRKRNFLCSREGFKSRKMSSDKTTKYERKETRTGCEASIQLTVQ-DGKWVISNVVLEHNHEL 276
                           6*****************9998.7888********************9999*******************9.****************9 PP

                  FAR1  90 a 90 
                            
  HL.SW.v1.0.G015017.1 277 D 277
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-22190277IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.359465501IPR007527Zinc finger, SWIM-type
PfamPF044345.0E-5472501IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-6476503IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MREIGDSSSA GSTPPPPASF DHFSPTNFFA DYPVTDDPID PKPGSDHHDD LLWKHLADDG  60
WCFFSDNNNT MHDSHHQTFT NGRPTASEPL FHNNAATRRP PIPSSDRAKR KQNLIGMDRR  120
DHLAMAYTYS SPIPASPPRL LSLASENDRH EISSNESGSE DEIQSDLPEN EKMKLPEVGM  180
EFFSEEEAYN FYKKYAGEIG FAVRRGKVVR LTNRAIRKRN FLCSREGFKS RKMSSDKTTK  240
YERKETRTGC EASIQLTVQD GKWVISNVVL EHNHELDRPR PSHDTEAPSW SAKTALDDGY  300
GRVRQEDGTV QYVKLDRTSN DVQNLMNLFS CLQAKDPSFF YAIKVDSQIR SKNFFWRDCR  360
SRMDYNYFGD VLVLDTTCRV DNMYVNESKR RRLEEQHEDL RCKKTVNLRS RKGMEKHAED  420
LYTCTMFGKF QEELLDSLSL AIEEVTSCAN ISTFKLTEEG HKKEDIVTFD CSSSSVTCSC  480
GKFESAGILC SHSIKVLNAK NVFQIPSQYI MKRWTKSAKE GDEQAGVVVD SEDLLTGNSQ  540
GKLSIVSRNL MHKALNVISK SLASEDSRKV VETHLDLASR EADDILKEQG SIEQINSMTN  600
LDEVNYVRSQ NIASNSSCIN QDRQGSKYRL KKSMNKQRTW KTNARENESQ SHGNHPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018992.11e-89protein FAR1-RELATED SEQUENCE 7-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-25FAR1-related sequence 5