PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 785aa MW: 86577 Da PI: 8.0986 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.3e-08 | 690 | 747 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqk 46 r++W+ +E ++l+++ ql g+ W+ I++++ +R++ qcksrw + HL.SW.v1.0.G014497.1 690 RNKWSNQEVKKLIELRGQLDGRfqvvkgrmaLWEEISKELLsdgMNRSPGQCKSRWTS 747 79******************************************9***********76 PP | |||||||
2 | trihelix | 71.5 | 1.5e-22 | 692 | 772 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qev++Lie+r +++ r++ k +++lWee+sk + + g++rsp qCk++w +l ++y+ +k g+k++ +++p+f++++ HL.SW.v1.0.G014497.1 692 KWSNQEVKKLIELRGQLDGRFQVVKGRMALWEEISKELLSDGMNRSPGQCKSRWTSLVQEYEDTKSGKKNN-----KSWPHFEDMD 772 7*******************************************************************984.....56*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.8E-66 | 103 | 353 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.62E-54 | 104 | 369 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 5.1E-24 | 116 | 313 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 4.7E-10 | 128 | 263 | IPR001279 | Metallo-beta-lactamase |
PROSITE profile | PS50090 | 9.477 | 685 | 749 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 686 | 750 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.85E-5 | 688 | 750 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-7 | 689 | 751 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 9.3E-21 | 690 | 774 | No hit | No description |
CDD | cd12203 | 7.20E-21 | 691 | 756 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MKLELLGGFS PSLSSSSSSS SFFSPKMMAL GSLSLCPCSL LWRPNFTRRS VSCSIGSPNA 60 VGASKSNASA RRRPGRKEGP RKSMEDSVQR KMEQFYEGRE GPPIRVLPIG GLGEIGMNCM 120 LVGNYDRYIL IDAGVMFPDY DELGVQKIIP DTTFIKRWSH KIEAVIITHG HEDHIGALPW 180 VIPALDSNTP IFASSFTMEL IRKRLKENGI FVSSRLKVFR TKRKFMAGPF EIEPLRVTHS 240 IPDCCGLVLR CADGTILHTG DWKIDESPLD GKVFDREGLE ELAKEGVTLM MSDSTNVLSP 300 GRTTSESHVA DALLRHISAA KGRVITTQFA SNIHRLGSVK AAADLTGRKL VFVGMSLRTY 360 LDAAFKDGKA PIDPSSLVKV EDIEAYAPKD LLIVTTEPRA ALNLASFGSS HSLKLNEEDL 420 IFHNIFCQYM ENFCSSKSMN CLGNQPVSGT LLMEILRPQN VNGLSENTIK GKIRITTRCL 480 WLDKGKLLDA LHKAAHAALS SCPVNCPLAH MERTVSEVLR KLVRKYSGKR PEVIAIALEN 540 PAAVISDEVS ARLSGKSHVG FETSALNRKI DGHPNKGKSN KVQAEVEKRN SNLDINLQQD 600 LGGDGVEMEL LPEEETTTST SDSDMLSSDS KESDEFWKPF TGSAIPVDNV VEENNGSIPS 660 QEQSLLDKVG KESIETTTDP KPKPSKPVKR NKWSNQEVKK LIELRGQLDG RFQVVKGRMA 720 LWEEISKELL SDGMNRSPGQ CKSRWTSLVQ EYEDTKSGKK NNKSWPHFED MDKILSNSEA 780 IEAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3bk1_A | 7e-56 | 104 | 422 | 17 | 343 | Metal dependent hydrolase |
3bk2_A | 7e-56 | 104 | 422 | 17 | 343 | Metal dependent hydrolase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229589 | 0.0 | KP229589.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB33) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866975.1 | 0.0 | uncharacterized protein LOC107404538 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A2P5DVM7 | 0.0 | A0A2P5DVM7_PARAD; Ribonuclease J | ||||
STRING | XP_010105237.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5099 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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