PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YC | ||||||||
Protein Properties | Length: 115aa MW: 12446.4 Da PI: 8.2607 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 95.7 | 3.9e-30 | 18 | 103 | 18 | 100 |
NF-YC 18 nhelPlarikkilkad...edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 h lPlarikki+k+ ++vkmis eaP++++kacel+i +lt +sw + + krr l+k d+ +av td+fdflv v +++ HL.SW.v1.0.G014007.1 18 GHCLPLARIKKIMKSSgsgDEVKMISGEAPIVFAKACELLIKDLTHKSWTLTLQGKRRILHKDDVVSAVIATDVFDFLVALVSHED 103 588***********7533389**********************************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.22E-21 | 14 | 95 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.1E-26 | 16 | 86 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-16 | 21 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MRQAGTYSGI RFGGNNGGHC LPLARIKKIM KSSGSGDEVK MISGEAPIVF AKACELLIKD 60 LTHKSWTLTL QGKRRILHKD DVVSAVIATD VFDFLVALVS HEDHLLSSPA DERE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-28 | 7 | 99 | 4 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089137.1 | 8e-50 | nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q9ZVL3 | 5e-29 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A2P5ELK3 | 2e-59 | A0A2P5ELK3_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | XP_010089137.1 | 3e-49 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-31 | nuclear factor Y, subunit C3 |