PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G013529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YB | ||||||||
Protein Properties | Length: 230aa MW: 25031.8 Da PI: 6.9612 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.9 | 4.8e-56 | 26 | 121 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +e+drflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+ky HL.SW.v1.0.G013529.1 26 KEHDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKY 114 799************************************************************************************** PP NF-YB 91 relegek 97 re+e+ek HL.SW.v1.0.G013529.1 115 REVEEEK 121 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.2E-53 | 23 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.17E-40 | 29 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-27 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.1E-20 | 59 | 77 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 62 | 78 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 9.1E-20 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 9.1E-20 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSAKRNQTSS SGSPIGSPLS PDSSSKEHDR FLPIANVSRI MKKSLPANAK ISKEAKETVQ 60 ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKVY LNKYREVEEE 120 KNSMAMVRQE ELSPTHTTTT SDHEMVHGSS SSRVAYNSFP NKVDFQDFSV GGFYSIGGPK 180 SYNGEISGMI NIGYGDNYMS GIHETGGGGH GNPNRAVVAA QLHHGNIGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-48 | 26 | 116 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-48 | 26 | 116 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890973.1 | 5e-96 | nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | A0A2P5BPX9 | 1e-118 | A0A2P5BPX9_TREOI; Nuclear transcription factor Y subunit B | ||||
STRING | XP_010099896.1 | 4e-90 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-62 | nuclear factor Y, subunit B3 |