PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013380.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 460aa    MW: 50607.4 Da    PI: 7.2402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013380.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1757106255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  HL.SW.v1.0.G013380.1  57 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 106
                           59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-3357120IPR001471AP2/ERF domain
PfamPF008475.5E-1157106IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2157114IPR016177DNA-binding domain
CDDcd000189.78E-3057113No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2957113IPR001471AP2/ERF domain
PROSITE profilePS5103222.11557114IPR001471AP2/ERF domain
PRINTSPR003673.0E-95869IPR001471AP2/ERF domain
PRINTSPR003673.0E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEEAFTRLDG TSSTGLTPTN LSTESDQPHN KKYANATATN KRSLRESAGA SSGGTMRYRG  60
VRRRPWGRYA AEIRDPQSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPSSPP  120
PPPLSSDHHH HHHPLYTPPF NFAKHSQASI KSQLMGCGTT VPPNPHQFPS NWSRFPHSSN  180
PNVDFSGSTV VPQRNGNNST SSTSSSSSMN MQMFLRDHFN SSLNNNMVSP AHQSTLYNQF  240
PYMNNNNGSS SSSSSASSSS SSCYSTLTTT SFSGYPMVNS EISSSMPNNC TKTTTAHQEV  300
FDHEPESFFP KEESDSGLLE EVIQRFFPKS SSKKYNYTDS LPKYLESSTN SSVNPLMSCE  360
NSSTILSVSQ TTGIKTDQNN FMGCYSSDYQ SPSNINVPLQ QLGCLNNTTV VSSQTVPFNN  420
HDAAMNFHQF GQDQSMFMDD IFQFPELVSA FAARALQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2049113971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FMM91e-122A0A2P5FMM9_TREOI; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-12DORNROSCHEN-like