PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013350.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 395aa    MW: 43102.2 Da    PI: 5.1067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013350.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174792147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  HL.SW.v1.0.G013350.1 47 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 92
                          79******************************.***********985 PP
2Myb_DNA-binding537.9e-1799143147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r++++ eEd ++v a++ +G++ W++Iar +  gRt++ +k++w++ 
  HL.SW.v1.0.G013350.1  99 RKPFSDEEDNIIVAAHEIHGNK-WAAIARLLT-GRTDNAIKNHWNST 143
                           789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2434297IPR017930Myb domain
SuperFamilySSF466898.99E-3044140IPR009057Homeodomain-like
SMARTSM007176.2E-154695IPR001005SANT/Myb domain
PfamPF002492.9E-164792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2548100IPR009057Homeodomain-like
CDDcd001672.89E-144991No hitNo description
SMARTSM007178.2E-1698146IPR001005SANT/Myb domain
PROSITE profilePS5129421.29398148IPR017930Myb domain
PfamPF002494.5E-1499143IPR001005SANT/Myb domain
CDDcd001679.30E-12101144No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDTVDDITTL TSEIDAEELD GLGGSGDDAG KTGDDGGSGK AGKDRVKGPW SPEEDAILSR  60
LVSKFGARNW SLIARGISGR SGKSCRLRWC NQLDPAVKRK PFSDEEDNII VAAHEIHGNK  120
WAAIARLLTG RTDNAIKNHW NSTLRRRCLE RDKVKLEPGN AVEDVSFDRT KASSEETMSC  180
GDTNSFKSME GRDPSFVEHM VDHNEIKLPA EGYLSHEVLE PPTLFRPVAR VSAFSIYNTL  240
DGQQPLSLIQ RPVPMQGPLV QLAKSDVQIF KLLEAEYGGN SVPHQCGHGC CAVKDGKNSQ  300
NSLLGPDFVD FTEPPAISSF DLAAIATDIS NLAWLKSGLE NTSVRAMDDA AGRIISNGSQ  360
IQMGRFEESR TSDHLVFEER RENLMGMKTN VLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-39441474107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101850.10.0transcription factor MYB1
SwissprotQ425751e-106MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2P5EXD30.0A0A2P5EXD3_TREOI; MYB transcription factor
STRINGXP_010101850.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-105myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]