PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012982.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Dof
Protein Properties Length: 375aa    MW: 40872.9 Da    PI: 8.4859
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012982.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.86.7e-4073132261
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  HL.SW.v1.0.G012982.1  73 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKHL 132
                           7899******************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2873130IPR003851Zinc finger, Dof-type
PfamPF027019.2E-3275131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.50977131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSQIKNISEN CIGTDQGIKL FGRTIPLRHT QIPTKSQIKD CDSDIRKSEK DSPVKANSKE  60
NSEEKEEKEF KKPDKIIPCP RCKSMETKFC YFNNYNVNQP RHFCKNCQRY WTAGGSMRNV  120
PVGAGRRKNK HLASQFRHIM ASVDGTQNSS DDPSTGKVLR FCQEQVPDNV DVSQCQSSSL  180
EGDVGAPARS HPVPCYPVVS WSPGWSIPAA AAAAAASQHS QQFFVSNVGD SSQVQWLQAP  240
VLSAAPGQCA PAVPVQFVQA ASYWGCMPIW AAAQSGNVSM SPTLGKHSRE ESEKCIFAPK  300
TMGIDGENEA LKNRIRAGLG SEIDKENSVV NGSVFKRLAH SKIEGKDHVL YSSSPVLEAN  360
PAAVSRSHSF QEST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032061.11e-107cyclic dof factor 3
TrEMBLA0A2P5A7T91e-145A0A2P5A7T9_PARAD; Zinc finger, Dof-type
STRINGXP_010089192.11e-104(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2557323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.12e-38Dof family protein