PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Dof | ||||||||
Protein Properties | Length: 375aa MW: 40872.9 Da PI: 8.4859 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.8 | 6.7e-40 | 73 | 132 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ HL.SW.v1.0.G012982.1 73 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKHL 132 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 73 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.2E-32 | 75 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSQIKNISEN CIGTDQGIKL FGRTIPLRHT QIPTKSQIKD CDSDIRKSEK DSPVKANSKE 60 NSEEKEEKEF KKPDKIIPCP RCKSMETKFC YFNNYNVNQP RHFCKNCQRY WTAGGSMRNV 120 PVGAGRRKNK HLASQFRHIM ASVDGTQNSS DDPSTGKVLR FCQEQVPDNV DVSQCQSSSL 180 EGDVGAPARS HPVPCYPVVS WSPGWSIPAA AAAAAASQHS QQFFVSNVGD SSQVQWLQAP 240 VLSAAPGQCA PAVPVQFVQA ASYWGCMPIW AAAQSGNVSM SPTLGKHSRE ESEKCIFAPK 300 TMGIDGENEA LKNRIRAGLG SEIDKENSVV NGSVFKRLAH SKIEGKDHVL YSSSPVLEAN 360 PAAVSRSHSF QEST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024032061.1 | 1e-107 | cyclic dof factor 3 | ||||
TrEMBL | A0A2P5A7T9 | 1e-145 | A0A2P5A7T9_PARAD; Zinc finger, Dof-type | ||||
STRING | XP_010089192.1 | 1e-104 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25573 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 2e-38 | Dof family protein |