PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G010283.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 471aa MW: 52211.9 Da PI: 6.1714

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G010283.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	93	146	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ HL.SW.v1.0.G010283.1 93 PRLRWTPDLHLCFVRAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 146 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-30	89	147	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.085	89	149	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-15	90	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-23	93	148	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-9	94	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAERSSDDDD GSSQVSKTNK DYNIMEHINE DDDEGEEEDD DNEDDDDEKD DDDDDDDRKN 60 GRSSSNSTVE ESGSKKGATS GGSVRQYVRS KTPRLRWTPD LHLCFVRAVE RLGGQDRATP 120 KLVLQLMNIK GLSIAHVKSH LQMYRSKKTE DPNQVLSEQG FFLEAAGREH HHIYNLSQLP 180 MLQSFNQYWP NSSLIRSYGD SSSWRSGRDH QIYNSPRSSI RAALDSANRT SHGSVQGFNY 240 GSVAERLLLR NNNITNAASS AQMGTTTANS LLTNNVSSFN SASWRTRHHM QAHQNESFQR 300 SWRTQFGQTS SMEDHHSINN ILPKKFNEKG ADDDDDNHQG NTTLMKSSSS SIVGSSHHQL 360 SKQEGQRNVL KRKALDSQNG DDLDLDLSLK LTPNTKVKIG GGLEKGLVIG NNEEVEENST 420 SLSLSLSPSS PSKLTRLNIG GVRSSNGIIM NRKINNNGRL MAASTLDLTL *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAERSSDDDD GSSQVSKTNK DYNIMEHINE DDDEGEEEDD DNEDDDDEKD DDDDDDDRKN  60
GRSSSNSTVE ESGSKKGATS GGSVRQYVRS KTPRLRWTPD LHLCFVRAVE RLGGQDRATP  120
KLVLQLMNIK GLSIAHVKSH LQMYRSKKTE DPNQVLSEQG FFLEAAGREH HHIYNLSQLP  180
MLQSFNQYWP NSSLIRSYGD SSSWRSGRDH QIYNSPRSSI RAALDSANRT SHGSVQGFNY  240
GSVAERLLLR NNNITNAASS AQMGTTTANS LLTNNVSSFN SASWRTRHHM QAHQNESFQR  300
SWRTQFGQTS SMEDHHSINN ILPKKFNEKG ADDDDDNHQG NTTLMKSSSS SIVGSSHHQL  360
SKQEGQRNVL KRKALDSQNG DDLDLDLSLK LTPNTKVKIG GGLEKGLVIG NNEEVEENST  420
SLSLSLSPSS PSKLTRLNIG GVRSSNGIIM NRKINNNGRL MAASTLDLTL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-18	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-18	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-18	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-18	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877428.1	3e-87	putative Myb family transcription factor At1g14600
TrEMBL	A0A2P5BAD6	1e-150	A0A2P5BAD6_TREOI; Octamer-binding transcription factor
STRING	XP_010105426.1	1e-103	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-47	G2-like family protein