PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008900.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 361aa MW: 40154.5 Da PI: 6.5699

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008900.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	160	206	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l HL.SW.v1.0.G008900.1 160 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 206 9****************************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-15	156	220	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	158	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	160	211	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-10	160	214	No hit	No description
Pfam	PF00170	8.7E-9	160	206	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.98E-24	161	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEMQDPSKPD LGPNPKPENK AFRSQTTMMM MSNPSPACPA RGSYHRRSQS EVQFRIPDDL 60 DLLSDPFDGP SGSFEELGSE DDLFCTYMDI EKFGSKLDDG PSGHKNDNAS GDGGGEEEKH 120 ARPRHRHSNS VDGSSSLDTI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKA 180 RYITELERKV QTLQTEATTL SAQLTLFQRD TTGLSGENTD LKLRLQAMEQ QAQLRDALNE 240 ALKKEVERLK MATGEMMTPT DTYHFGMHHI PYNHSSFFSN QPQSGSGDPR NIQMQQFNHF 300 QSNVTPTHQP MHATHASSDM SQLDHIGRMQ GLDISSNGRG SHLVKPEGPS ISPSESSNRF 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEMQDPSKPD LGPNPKPENK AFRSQTTMMM MSNPSPACPA RGSYHRRSQS EVQFRIPDDL  60
DLLSDPFDGP SGSFEELGSE DDLFCTYMDI EKFGSKLDDG PSGHKNDNAS GDGGGEEEKH  120
ARPRHRHSNS VDGSSSLDTI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKA  180
RYITELERKV QTLQTEATTL SAQLTLFQRD TTGLSGENTD LKLRLQAMEQ QAQLRDALNE  240
ALKKEVERLK MATGEMMTPT DTYHFGMHHI PYNHSSFFSN QPQSGSGDPR NIQMQQFNHF  300
QSNVTPTHQP MHATHASSDM SQLDHIGRMQ GLDISSNGRG SHLVKPEGPS ISPSESSNRF  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024179901.1	1e-177	transcription factor RF2b
Swissprot	O22873	1e-126	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2P6SLS0	1e-175	A0A2P6SLS0_ROSCH; Putative transcription factor bZIP family
STRING	XP_010103645.1	1e-174	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-121	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]