PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRAS | ||||||||
Protein Properties | Length: 637aa MW: 72574.6 Da PI: 7.7141 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 352.4 | 7e-108 | 262 | 634 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cAeav+ +d e a++lL +++ ++s +g+ qRla+yf +AL+arl++ ++ ly al++++ s + ++l++ +lf ++P HL.SW.v1.0.G008311.1 262 LRNLLTHCAEAVAVNDRETATELLLQIRRNSSFSGNGSQRLAHYFGNALEARLNGIGNDLYTALAAKRMS---VLTSLKSCRLFLSACP 347 689************************************************************9999998...9*************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 ++k+s++ N++Ile +e+++++Hii f+i +G+QWp+L+q L+ +++gpp lRiTg++ p +g + +leetg+rLa ++++++vpf HL.SW.v1.0.G008311.1 348 LIKLSNFFINHTILELAEKANTLHIIHFGILNGFQWPSLIQRLSMKSGGPPLLRITGIDLPLPGfrPAARLEETGDRLAYYCKRFNVPF 436 *************************************************************99999*********************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +++ +a+++e+++ e+L++++++ ++Vn+ + +lld+++ l+s rd+vLklvk++ P++++ + +n++ F +rf eal+y+s HL.SW.v1.0.G008311.1 437 TYKP-IAQAWENITCEDLNINKDDITVVNSLYLFRYLLDDTAGLHSSRDAVLKLVKRTHPDIFIQGIVNGAYNAPFFTTRFREALYYFS 524 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 ++fd+lea+ p+e ++r+++Ere+ g+ei nvvace ++r+er et+++W++r +aG+k++pls +++k+++ + + ++ + + v+e HL.SW.v1.0.G008311.1 525 TVFDMLEANSPPEFeQDRKVYERECYGKEILNVVACESSKRVERPETYKQWHARNLRAGLKQLPLSREIMKKVEQMKASCYHKDFLVDE 613 ******9998888769999**************************************************************888***** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 +s+++++gWk+r L+++S+W+ HL.SW.v1.0.G008311.1 614 DSQWMLQGWKGRVLYALSCWK 634 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.482 | 236 | 614 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-105 | 262 | 634 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MSTFPPDQEE APLLNCISKI LLEEDMEEGT YFFSDATVEA AQRPFSDALA EKNSSERRLI 60 SAPRSYASRQ HINLVHNNTT TTPNYSSDHC FNVDQPFLLN DVFSSTIHEP YCSYNSIITA 120 LPVINYNFQP SSSTTPRHAD KMVIDFEGDN PMIPLKLMKE IPSKGKSQYN HLNGGLLMKR 180 KSVNQLEIET LAGRKDKQLT VYSDHDSELY AETFDMVLLA NGWQNGLETS KRRESKVSNN 240 SNYIAKTRRR KWAGGEEDLL DLRNLLTHCA EAVAVNDRET ATELLLQIRR NSSFSGNGSQ 300 RLAHYFGNAL EARLNGIGND LYTALAAKRM SVLTSLKSCR LFLSACPLIK LSNFFINHTI 360 LELAEKANTL HIIHFGILNG FQWPSLIQRL SMKSGGPPLL RITGIDLPLP GFRPAARLEE 420 TGDRLAYYCK RFNVPFTYKP IAQAWENITC EDLNINKDDI TVVNSLYLFR YLLDDTAGLH 480 SSRDAVLKLV KRTHPDIFIQ GIVNGAYNAP FFTTRFREAL YYFSTVFDML EANSPPEFEQ 540 DRKVYERECY GKEILNVVAC ESSKRVERPE TYKQWHARNL RAGLKQLPLS REIMKKVEQM 600 KASCYHKDFL VDEDSQWMLQ GWKGRVLYAL SCWKPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-48 | 268 | 635 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-48 | 268 | 635 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-48 | 268 | 635 | 24 | 379 | Protein SCARECROW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 250 | KRRESKVSNNSNYIAKTRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873960.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A2P5D652 | 0.0 | A0A2P5D652_TREOI; GRAS transcription factor | ||||
TrEMBL | A0A2P5DQI7 | 0.0 | A0A2P5DQI7_PARAD; GRAS transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-154 | GRAS family protein |