PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 637aa    MW: 72574.6 Da    PI: 7.7141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008311.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.47e-1082626341374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cAeav+ +d e a++lL +++ ++s +g+  qRla+yf +AL+arl++ ++ ly al++++ s   + ++l++ +lf  ++P
  HL.SW.v1.0.G008311.1 262 LRNLLTHCAEAVAVNDRETATELLLQIRRNSSFSGNGSQRLAHYFGNALEARLNGIGNDLYTALAAKRMS---VLTSLKSCRLFLSACP 347
                           689************************************************************9999998...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           ++k+s++  N++Ile +e+++++Hii f+i +G+QWp+L+q L+ +++gpp lRiTg++ p +g   + +leetg+rLa ++++++vpf
  HL.SW.v1.0.G008311.1 348 LIKLSNFFINHTILELAEKANTLHIIHFGILNGFQWPSLIQRLSMKSGGPPLLRITGIDLPLPGfrPAARLEETGDRLAYYCKRFNVPF 436
                           *************************************************************99999*********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            +++ +a+++e+++ e+L++++++ ++Vn+ +   +lld+++ l+s rd+vLklvk++ P++++    +  +n++ F +rf eal+y+s
  HL.SW.v1.0.G008311.1 437 TYKP-IAQAWENITCEDLNINKDDITVVNSLYLFRYLLDDTAGLHSSRDAVLKLVKRTHPDIFIQGIVNGAYNAPFFTTRFREALYYFS 524
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                           ++fd+lea+ p+e  ++r+++Ere+ g+ei nvvace ++r+er et+++W++r  +aG+k++pls +++k+++ + + ++ + + v+e
  HL.SW.v1.0.G008311.1 525 TVFDMLEANSPPEFeQDRKVYERECYGKEILNVVACESSKRVERPETYKQWHARNLRAGLKQLPLSREIMKKVEQMKASCYHKDFLVDE 613
                           ******9998888769999**************************************************************888***** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           +s+++++gWk+r L+++S+W+
  HL.SW.v1.0.G008311.1 614 DSQWMLQGWKGRVLYALSCWK 634
                           ********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.482236614IPR005202Transcription factor GRAS
PfamPF035142.4E-105262634IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MSTFPPDQEE APLLNCISKI LLEEDMEEGT YFFSDATVEA AQRPFSDALA EKNSSERRLI  60
SAPRSYASRQ HINLVHNNTT TTPNYSSDHC FNVDQPFLLN DVFSSTIHEP YCSYNSIITA  120
LPVINYNFQP SSSTTPRHAD KMVIDFEGDN PMIPLKLMKE IPSKGKSQYN HLNGGLLMKR  180
KSVNQLEIET LAGRKDKQLT VYSDHDSELY AETFDMVLLA NGWQNGLETS KRRESKVSNN  240
SNYIAKTRRR KWAGGEEDLL DLRNLLTHCA EAVAVNDRET ATELLLQIRR NSSFSGNGSQ  300
RLAHYFGNAL EARLNGIGND LYTALAAKRM SVLTSLKSCR LFLSACPLIK LSNFFINHTI  360
LELAEKANTL HIIHFGILNG FQWPSLIQRL SMKSGGPPLL RITGIDLPLP GFRPAARLEE  420
TGDRLAYYCK RFNVPFTYKP IAQAWENITC EDLNINKDDI TVVNSLYLFR YLLDDTAGLH  480
SSRDAVLKLV KRTHPDIFIQ GIVNGAYNAP FFTTRFREAL YYFSTVFDML EANSPPEFEQ  540
DRKVYERECY GKEILNVVAC ESSKRVERPE TYKQWHARNL RAGLKQLPLS REIMKKVEQM  600
KASCYHKDFL VDEDSQWMLQ GWKGRVLYAL SCWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4826863525380Protein SCARECROW
5b3h_A1e-4826863524379Protein SCARECROW
5b3h_D1e-4826863524379Protein SCARECROW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230250KRRESKVSNNSNYIAKTRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873960.10.0scarecrow-like protein 33
TrEMBLA0A2P5D6520.0A0A2P5D652_TREOI; GRAS transcription factor
TrEMBLA0A2P5DQI70.0A0A2P5DQI7_PARAD; GRAS transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-154GRAS family protein