PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007261.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 222aa    MW: 25136.7 Da    PI: 9.1271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007261.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-163380148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  HL.SW.v1.0.G007261.1 33 KGLWSPEEDERLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 80
                          678*******************************************97 PP
2Myb_DNA-binding50.54.7e-1686130147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+++++E+ l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
  HL.SW.v1.0.G007261.1  86 RGAFSPQEEHLILHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 130
                           89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3882880IPR017930Myb domain
SuperFamilySSF466896.36E-2931127IPR009057Homeodomain-like
SMARTSM007175.1E-113282IPR001005SANT/Myb domain
PfamPF002493.5E-143380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-233487IPR009057Homeodomain-like
CDDcd001674.51E-93680No hitNo description
PROSITE profilePS5129425.18681135IPR017930Myb domain
SMARTSM007171.6E-1485133IPR001005SANT/Myb domain
PfamPF002495.1E-1586130IPR001005SANT/Myb domain
CDDcd001678.92E-1088131No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2688136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRKGNSDYDD DSSSGRSSSK NNSNKKVVVA MRKGLWSPEE DERLMRYMLT NGQGCWSDIA  60
RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEHLILHL HSILGNRWSQ IAARLPGRTD  120
NEIKNFWNST LKKRLKSVNN NNTSTTTTTT TTTSSSSPND SNSSEQDQLF TADHLVLNNN  180
INNNNNVGDQ PQQPMLTQQV PMHSDYYYYD YSSCSSSTTT AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-283113525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKKRLKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219191.21e-78transcription factor MYB6
RefseqXP_008231282.11e-78PREDICTED: transcription factor MYB82-like
SwissprotQ9C6U13e-69MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A251Q9A93e-77A0A251Q9A9_PRUPE; Uncharacterized protein
STRINGXP_008231282.14e-78(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.16e-63myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]