PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G003392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 24034.3 Da PI: 7.9008 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.6 | 7.5e-27 | 44 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ HL.SW.v1.0.G003392.1 44 FYDEYARQVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 132 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-24 | 44 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MDSDEGAEAV ESSAVQELGT YEGDAIVEPY EGMAFDSEDA AKIFYDEYAR QVGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GHCVSIRGKF GPVRKPRPST REGCKAMIHV KYDKSGKWVI 120 TKFVKDHNHP LVFSPREARQ TMDEKDKKIQ ELTAELRNKK RLCTTYQEQL AAFIKIVEEH 180 SDQLSKKVQN VVSNLKEFES MDQDLLQHR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008222477.1 | 1e-139 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_016648093.1 | 1e-139 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020409810.1 | 1e-139 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020409811.1 | 1e-139 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021833156.1 | 1e-139 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 5e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P5CSI0 | 1e-141 | A0A2P5CSI0_PARAD; FHY3/FAR1 family | ||||
TrEMBL | A0A2P5ESY1 | 1e-141 | A0A2P5ESY1_TREOI; Uncharacterized protein (Fragment) | ||||
STRING | XP_008222477.1 | 1e-138 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-113 | FAR1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|