PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002410.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 433aa    MW: 48916.2 Da    PI: 4.5629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002410.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G002410.1 16 RGPWSPAEDLRLISFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                          89******************************99************97 PP
2Myb_DNA-binding49.31.2e-1569114148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE+e + ++++ lG++ W++Ia++++ gRt++++k+ w+++l
  HL.SW.v1.0.G002410.1  69 RGNFSIEEEEAIMKLHETLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.5111163IPR017930Myb domain
SuperFamilySSF466892.27E-2914110IPR009057Homeodomain-like
SMARTSM007171.5E-121565IPR001005SANT/Myb domain
PfamPF002491.5E-141663IPR001005SANT/Myb domain
CDDcd001672.32E-91863No hitNo description
PROSITE profilePS5129425.04364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2667118IPR009057Homeodomain-like
SMARTSM007173.6E-1368116IPR001005SANT/Myb domain
PfamPF002492.8E-1469114IPR001005SANT/Myb domain
CDDcd001672.39E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGRGRAPCCD KSQVKRGPWS PAEDLRLISF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSIEEEEAI MKLHETLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLSS  120
KDDDQSNPNN KGDDQSKEEY SSITSSSSSS SSTTTLSSGN KRSSSVQQQQ QPEHGSQFDL  180
ESPPKRARIE EDEKGSVDDQ KEIQDKIKQD DDDNRKKNEP NEQVLLVMTR STTTSSASSY  240
DSNVSNNSDQ VGASKLDHQG EVDMDLLFDF KGAYYDDDVS GLLLQEEVNK PEVDYYYEPI  300
IPLETDYDFW NMVDSLGTTI QPNNNNNEVV QLVQGSEAAA AATTCDHDHG QSSSFGVLDD  360
QFYGSDEINE TKKWFRYLEN ELGLEAGGVS TTENDNQNLA IQDVRQEVDI FQYHHHDVIE  420
AKSDYPFNLS QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-25161184105C-Myb DNA-Binding Domain
1msf_C1e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093022.11e-101transcription factor MYB63
TrEMBLA0A2P5CB641e-140A0A2P5CB64_TREOI; MYB transcription factor
STRINGXP_010093022.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-73myb domain protein 58