PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

ERF

Protein Properties

Length: 289aa MW: 31269 Da PI: 4.7025

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001989.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.6	3e-18	80	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g HL.SW.v1.0.G001989.1 80 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 130 68***998.******854...59********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-12	80	130	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.051	81	138	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-36	81	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-21	81	139	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-31	81	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-10	82	93	IPR001471	AP2/ERF domain
CDD	cd00018	2.31E-30	82	140	No hit	No description
PRINTS	PR00367	5.1E-10	104	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLSPSAMADP VSSSETESSV NSSTSSSGLL LLNKDQGIIP DPNQKRVKRA RENCSNSNSN 60 NNNNSSSSSN NSNGNNSKHP VYRGVRMRTW GKWVSEIREP RKKNRIWLGT FSTPEMAARA 120 HDVAALSIKG NSAILNFPEL AGSLPRPESN SPRDVQAAAT KAASMEFPSP SPSPSTSSST 180 TTTSSAMSQS SSSSSLVATS SNYDVSSSPS TPEELSEIVE LPSLDTSFES GNEFVFEDSV 240 EGWLYPPPWY HHQSLFEEEY GYFSEDHIAM SEPECSIPSA FEALLWQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-20	70	138	3	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423303.1	5e-95	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	6e-64	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A2P5CMI3	1e-104	A0A2P5CMI3_PARAD; AP2/ERF domain containing protein
STRING	XP_008242523.1	8e-93	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]