PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001273.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

DBB

Protein Properties

Length: 333aa MW: 37148 Da PI: 5.0702

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001273.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.4	3.3e-09	3	42	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +C+ ++++e++ fC+ ++ lC+dC H+ H HL.SW.v1.0.G001273.1 3 IRCDVCDKEEASVFCTADEAALCDDCDRRVHHAnklaskH 42 58**************************997443666666 PP
2	zf-B_box	25	4e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ + e ++ lfC++++ lC++C +H+ Ht HL.SW.v1.0.G001273.1 54 ESPLCDICLERRAFLFCQEDRAILCRECDIPIHRAneHT 92 6789*****************************768876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.405	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.0E-7	3	43	IPR000315	B-box-type zinc finger
CDD	cd00021	9.09E-9	3	47	No hit	No description
SMART	SM00336	2.5E-10	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.84	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	4.5E-14	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.6E-6	54	93	IPR000315	B-box-type zinc finger
CDD	cd00021	1.82E-10	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MKIRCDVCDK EEASVFCTAD EAALCDDCDR RVHHANKLAS KHSRFSLLQP GFKESPLCDI 60 CLERRAFLFC QEDRAILCRE CDIPIHRANE HTKKHNRFLL TGAKLSPSSS TLYQNPSTSS 120 STATSSEAAI NTSSVTPIFS TTTTKRLITV VSNNNEITSS SSIDNMTPFP YNSTTNNESG 180 SYLTSSISEY LMETLPGWHV EDFLDPSSSS ASNNNNNGFC KTNNNDGEYE MSRDDDFDSN 240 KCFLNSSQDQ DQDQVGLYDW VPQISPPSKI SKNTNTTNSY HSNNGVFYAE KTDEMMMKKM 300 KFNYFNFNPK WGGDDNGCCI MIPPSSSSLK TF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010109757.1	1e-107	B-box zinc finger protein 20 isoform X1
TrEMBL	A0A2P5E5K9	1e-119	A0A2P5E5K9_PARAD; B-box-type zinc finger
STRING	XP_010109757.1	1e-107	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	3e-64	DBB family protein