PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001006.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 345aa    MW: 38193.8 Da    PI: 9.8314
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001006.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19204237134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  HL.SW.v1.0.G001006.1 204 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 237
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-19198249IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13199238No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15202237IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466202234IPR000679Zinc finger, GATA-type
CDDcd002025.34E-14203235No hitNo description
PfamPF003204.8E-17204237IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLPSYHNNL SSPSFVELKE DHTSSSLSLS YPHHAFMNPA QDQGNFFYRS ETQRFQLQAA  60
DHNKMNVSSG GSPYDHHHHP RAEESHESFH NHHDLKFSIT TTAAVAEDHI NYDMKNHTSH  120
DENINSVKWM SSKMRMMRKM ITNSDQTASN DTPTNFTTTP QNFEPPPPLP VMKINIKHPG  180
SPPGSTDHST SSSSNNNATI IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM  240
AAAAAAANGT VVPVDAPSMK NSAKAQQKEK KSRVGGGDDN RCVPFKKRCK LPSPSRGRRK  300
NKLCFEDLIV SVSKNTTAFQ RVFPQDERDA AILLMALSYG LVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090039.14e-94GATA transcription factor 21
TrEMBLA0A2P5BNR81e-119A0A2P5BNR8_PARAD; GATA transcription factor
STRINGXP_010090039.11e-93(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-33GATA family protein