PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G000878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29441.3 Da PI: 8.9281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.6e-55 | 24 | 162 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee++++yL++kv ++++ + ++i ++d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkd HL.SW.v1.0.G000878.1 24 LPPGFRFHPTDEEIITYYLTEKVMNSNFVA-SAIGDADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKD 111 79*************************999.88***************99999************************************ PP NAM 90 kevlsk....kgel.........vglkktLvfykgrapkgektdWvmheyrle 129 ke+++ + vg+kktLvfykgrapkgek++Wvmheyrle HL.SW.v1.0.G000878.1 112 KEIFKGnikgS--SsssssssclVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 162 ****9766550..1556667777****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-63 | 20 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.684 | 24 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-30 | 25 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEEGCVAASK GGSSSVEDRD LIDLPPGFRF HPTDEEIITY YLTEKVMNSN FVASAIGDAD 60 LNKCEPWDLP KKAKMGEKEW YFFCQRDRKY PTGMRTNRAT ESGYWKATGK DKEIFKGNIK 120 GSSSSSSSSS CLVGMKKTLV FYKGRAPKGE KSNWVMHEYR LEGKFSYYNL PKSAKDEWVV 180 CRVFHKNMGN NNNINKKMNN FSPNIIPHGL LRINSLGVDD MLDCSNSLPP LTDDPPPYNP 240 TTTTNTTTLR KRQPFQTNDI * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 22 | 187 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 22 | 187 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 22 | 187 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 22 | 187 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 22 | 187 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 22 | 187 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 22 | 187 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU094823 | 5e-69 | EU094823.1 Humulus lupulus clone ACC2-D3-3 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088484.1 | 1e-135 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 1e-106 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A2P5CS99 | 1e-142 | A0A2P5CS99_PARAD; NAC domain containing protein | ||||
STRING | XP_010088484.1 | 1e-134 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-102 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
---|---|---|---|
|