PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G000641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 21710 Da PI: 5.634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 24 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g HL.SW.v1.0.G000641.1 24 YRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAVAYDVAALALKG 72 9****888.8*********94....478***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-10 | 23 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 23 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.919 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 24 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.37E-30 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 6.5E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MHYSKQNSGS SSGTTTGSGF GRSYRGVRRR SSGKWVSEIR EPRKPNRIWL GTFPTPEMAA 60 VAYDVAALAL KGQDAELNFP NSAPSLPVPA SASPRDIQAA AASAAAAIGA AAAAMGAAAA 120 KDGGNSSGGI SCGNQYQGGQ DFLLEQERGV YNHEYVDEDL IFNMPNVLVN MAEGMLLSPP 180 RLDIAGDGDH DYYVGNAGDQ NLWKFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 23 | 82 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066511.1 | 5e-77 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 3e-51 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2P5AIH5 | 3e-79 | A0A2P5AIH5_PARAD; AP2/ERF domain containing protein | ||||
STRING | XP_009353175.1 | 6e-75 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-24 | ERF family protein |