PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 226aa MW: 25077.1 Da PI: 10.3978

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G267200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.7	2.9e-17	137	170	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C + +Tp+WR+gp g+ktLCnaCG++yr+ + Gorai.013G267200.1 137 CPHCEVMETPQWREGPIGPKTLCNACGVCYRSDR 170 9******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.1E-11	131	181	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.7E-13	135	168	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	10.554	135	167	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.46E-11	136	185	No hit	No description
SuperFamily	SSF57716	1.85E-13	136	194	No hit	No description
Pfam	PF00320	3.4E-14	137	170	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	137	162	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
GDFLDDIIVE SLTFSCDGYS QQSSSTKASY SKSTDVKGSS WFQTSSPVSV LDSRSSSSGA 60 NRTPINPNLS FQGKRCRTNR RRASTLNSPF TLPLVFSTFS TSQKPTRKRQ KKKNPKLLSG 120 SSESNNSSSQ QLVIRKCPHC EVMETPQWRE GPIGPKTLCN ACGVCYRSDR LFPEYRPAGS 180 PTFIPSLHSN SHKVVEMRRK SQFAGDSNNI RVVNPTETSL RYQLY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461702.1	1e-163	PREDICTED: GATA transcription factor 11-like
TrEMBL	A0A0D2U7M0	1e-164	A0A0D2U7M0_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.013G267200.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1681	25	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	2e-36	GATA transcription factor 11

Link Out ? help Back to Top
Phytozome	Gorai.013G267200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]