PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G220400.3
Common NameB456_013G220400, LOC105782155
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 381aa    MW: 42673.5 Da    PI: 4.3879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G220400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35501412102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ed+++++++swse  nsf+v+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+
  Gorai.013G220400.3  50 FLTKTFDMVEDPSTDSVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKQ 131
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Gorai.013G220400.3 132 LLKTIKRRRN 141
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-6046139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3846139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3446139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3150139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-205073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-20101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGVVVKEEE TQMTFATAVG TTAGLSSSSS SSNVTPQPKE GLNEVGPPPF LTKTFDMVED  60
PSTDSVVSWS EARNSFIVWD SHKFSTTLLP RYFKHNNFSS FIRQLNTYGF RKVDPDRWEF  120
ANEGFLGGQK QLLKTIKRRR NIVQSSQHQA GGGGACVELG QFGLDEELER LKRDRSVLLA  180
EIVRLRQQQQ HSRDQIVAME DRLQSTEKKQ QQIMSFLAKA LRNPTFIQQL AQNRQAQGVE  240
IGRKRRLTAS PSVENLQQEA VPVVVDNDQV EEQEGLATIE TEIETFFNSA MDDESSTEIK  300
DHIPSPMPLS SVTNNLGVNE TLWEELVHED LIAGEPKEEI VVGDQAEVDV EVEDLAANPI  360
DWGDDLQELV DQMGYLRPNP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-264113917129Heat shock factor protein 1
5d5v_B1e-264113917129Heat shock factor protein 1
5d5v_D1e-264113917129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674200.0KR067420.1 Gossypium hirsutum HSF39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462142.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_012462143.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_012462144.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411521e-135HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0D2SI860.0A0A0D2SI86_GOSRA; Uncharacterized protein
STRINGGorai.013G220400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-124heat shock transcription factor A2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]