PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G183500.1
Common NameB456_013G183500, LOC105783169
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 400aa    MW: 44125 Da    PI: 4.5325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G183500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.37.7e-3125116299
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX. CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk. 91 
                         Fl+k++++++d+++++++sws+++nsfvv++  efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +gk  
  Gorai.013G183500.1  25 FLSKTFDVVDDPSTDSVVSWSSDNNSFVVWKVPEFARDLLPMYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRGKFg 106
                         9****************************************************************999.........********999862 PP

                         ..XXXXXXXX CS
        HSF_DNA-bind  92 ..ellekikr 99 
                           e++e +kr
  Gorai.013G183500.1 107 lqEEVEGLKR 116
                         2244444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-3516104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3020107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-4621117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2625105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
METLHGSVPA ACADTAANGN TVTPFLSKTF DVVDDPSTDS VVSWSSDNNS FVVWKVPEFA  60
RDLLPMYFKH NNFSSFVRQL NTYGFKKVDP DRWEFANEGF LRGKFGLQEE VEGLKRDKNV  120
LMQELVRVRQ QQQATDNQLQ AYGQRVQMME QRQQQMMSFL AKVMQTPGFL NQLLQQQNEC  180
NRQLTGANKK RRLHRQDEEN LTGENGAVSP NGQTVKFQPL LNEHQMMEVN TSPRREHGAP  240
PSSALHSSSS SSEIAEVILS EVSPASWQSY LQAESGVPDS SLSTAAAQLT TETSVHKSLK  300
DAIFGSVPQM LGFVPDNIVG PESRNAEYLD PMSVVSNATM PTEADESCAG QDMEIMLDGS  360
PKLPAINDTF WEHFLTGSPL TGDTDEINSS SLENGAYGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2231167128Heat shock factor protein 1
5d5v_B3e-2231167128Heat shock factor protein 1
5d5v_D3e-2231167128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674190.0KR067419.1 Gossypium hirsutum HSF38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463906.10.0PREDICTED: heat stress transcription factor A-1b-like isoform X2
SwissprotO818211e-118HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0D2VH740.0A0A0D2VH74_GOSRA; Uncharacterized protein
STRINGGorai.013G183500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.27e-61heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  4. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]