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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G172000.3 |
Common Name | B456_013G172000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HB-other |
Protein Properties |
Length: 373aa MW: 41663 Da PI: 8.3819 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G172000.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 14.1 | 8.5e-05 | 54 | 71 | 38 | 55 |
TS-HHHHHHHHHHHHHHH CS
Homeobox 38 gLterqVkvWFqNrRake 55
++ +q+ +WFqNrR+
Gorai.013G172000.3 54 VVQFKQIWNWFQNRRYAI 71
66779**********865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MGRHPSSGGP AFRFTQTEME TILQEHHNQM PVREILMSLA DKFSESAERK GKIVVQFKQI 60 WNWFQNRRYA IRAKSNKVPG KLNITSMPRD DSNPMRNVPQ PVAAPVPPHM TAPMPASTVP 120 GAGRNLSESY MEFEAKSSRD GAWYDVATFL AHRYLDAGDP EVQVRIAGFG PEEDEWVNIR 180 KHVRQRSLPC EASECVAVLP GDLVLCFQEG KDQALYFDAH VLDAQRRRHD IRGCRCRFLV 240 RYDHDQSEEI VPLRKVCRRP ETDYRLQQLH AASNLSNHQH KTSTDQSTAL TPKIIGSSTE 300 AMQKLQNPDQ SRTATDSHFN VSVAAQTTNQ ESKILGIVTT DVTDPRISPV KNAMAAAATG 360 IGPGQNVQEA KL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4iuq_A | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 131 | 261 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 131 | 261 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 131 | 261 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
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Functional Description ? help
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Source |
Description |
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G18380.1 | 1e-141 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |