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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.013G172000.2 |
Common Name | B456_013G172000, LOC105783010 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HB-other |
Protein Properties |
Length: 374aa MW: 41766.1 Da PI: 8.163 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.013G172000.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 17.6 | 6.7e-06 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+ft++++ e+e+ ++ n+ p +e LA+k ++ +q+ +WFqNrR+
Gorai.013G172000.2 13 RFTQTEVAEMETILQEhhNQMPVREILMSLADKFsesaerkgkiVVQFKQIWNWFQNRRYAI 74
69999********99777999********************9999999***********865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MGRHPSSGGP AFRFTQTEVA EMETILQEHH NQMPVREILM SLADKFSESA ERKGKIVVQF 60 KQIWNWFQNR RYAIRAKSNK VPGKLNITSM PRDDSNPMRN VPQPVAAPVP PHMTAPMPAS 120 TGAGRNLSES YMEFEAKSSR DGAWYDVATF LAHRYLDAGD PEVQVRIAGF GPEEDEWVNI 180 RKHVRQRSLP CEASECVAVL PGDLVLCFQE GKDQALYFDA HVLDAQRRRH DIRGCRCRFL 240 VRYDHDQSEE IVPLRKVCRR PETDYRLQQL HAASNLSNHQ HKTSTDQSTA LTPKIIGSST 300 EAMQKLQNPD QSRTATDSHF NVSVAAQTTN QESKILGIVT TDVTDPRISP VKNAMAAAAT 360 GIGPGQNVQE AKL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4iuq_A | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 132 | 262 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 132 | 262 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G18380.1 | 1e-142 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |