PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G080100.1
Common NameB456_013G080100, LOC105781192
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 299aa    MW: 33163.6 Da    PI: 6.4434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G080100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05123142120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  Gorai.013G080100.1 123 FSCSVCNKTFNRYNNMQMHM 142
                         89*****************9 PP
2zf-C2H2163.5e-05208230123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +Cgk+F  + + ++H +++
  Gorai.013G080100.1 208 FECRKCGKPFAVRGDWRTHEKNC 230
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-5119145No hitNo description
PROSITE profilePS5015710.429123150IPR007087Zinc finger, C2H2
PfamPF128747.7E-5123142No hitNo description
Gene3DG3DSA:3.30.160.604.5E-6123142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.071123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM00355200171203IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.05E-6191228No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5194228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6208228IPR007087Zinc finger, C2H2
SMARTSM0035560208228IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQAPSFTYND ISPRESSCHE ADDHVEGEDS IVLSLGPPGQ APRISKYPLT SHPSSSTSSK  60
VPSCPNPTST TETESGVTVA LHIGPPTTVE TSSSNSNDIG NSLVEGQYWI PSPAQILVGP  120
TQFSCSVCNK TFNRYNNMQM HMWGHGSQYR KGPESLRGTK PASSMLRLPC YCCAEGCKNN  180
IDHPRSRPLK DFRTLQTHYK RKHGAKPFEC RKCGKPFAVR GDWRTHEKNC GKLWFCICGS  240
DFKHKRSLKD HVRAFGDGHA PHTVEYCEVE VEDDDNDDVD DNDNDDDNDE GNHAPLFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461198.10.0PREDICTED: zinc finger protein WIP6
RefseqXP_016704496.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-127ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0D2VAV40.0A0A0D2VAV4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KPT80.0A0A1U8KPT8_GOSHI; zinc finger protein WIP6-like
STRINGGorai.013G080100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-120C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]