PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G079600.1 | ||||||||
Common Name | B456_013G079600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 381aa MW: 41657.5 Da PI: 9.5557 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.7 | 1.1e-14 | 150 | 243 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................................TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........................................kapskKlsKaeiLekAveYI 51 ++h+e+ErrRR+riN+ +++Lr+llP+ + ++++K +Ka+ L ++++++ Gorai.013G079600.1 150 KSHSEAERRRRERINNHLAKLRSLLPSTTkvrlavvprrreskqrkglsidmikrnqgavpwkflagsstkLTRKPKTDKASLLAEVIQHV 240 79*************************777*****************************************9******************* PP HHH CS HLH 52 ksL 54 k+L Gorai.013G079600.1 241 KEL 243 *99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.132 | 147 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-12 | 150 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-12 | 151 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 151 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-9 | 153 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 220 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-12 | 221 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.9E-4 | 279 | 326 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ 60 YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA 120 VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKV 180 RLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV 240 KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR 300 LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS 360 SGNVKRQRTN ISTVLQRRSL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC751427 | 0.0 | KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465192.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 9e-89 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A0D2SAG8 | 0.0 | A0A0D2SAG8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G079600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G079600.1 |
Publications ? help Back to Top | |||
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