PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G032300.1

Common Name

B456_013G032300, LOC105782458

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 213aa MW: 23245 Da PI: 5.5617

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G032300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.9e-08	3	33	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +++ +++fC ++ lC++C ++ H Gorai.013G032300.1 3 TICDVCDSAAAIIFCAADEAALCRSCDEKVH 33 68**************************998 PP
2	zf-B_box	28.9	2.4e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gorai.013G032300.1 52 NVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.082	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	9.40E-6	3	45	No hit	No description
Pfam	PF00643	5.3E-6	3	41	IPR000315	B-box-type zinc finger
SMART	SM00336	5.8E-10	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.015	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.2E-7	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	3.47E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRTICDVCDS AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SNVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEEPGLQPLS 120 PNEVRKDLNQ QSKLAVRENR QNHGVSHIPL HDDNAKGDGE VGNELIDLNA RPQQVQGQAS 180 INQEQAMDVS SGNNHDTTSG IPDGSFKQEP EK*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462661.1	1e-157	PREDICTED: B-box zinc finger protein 19-like
Refseq	XP_012462662.1	1e-157	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	3e-82	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0D2V882	1e-155	A0A0D2V882_GOSRA; Uncharacterized protein
STRING	Gorai.013G032300.1	1e-156	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-71	DBB family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G032300.1
Entrez Gene	105782458

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]