PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G161700.1

Common Name

B456_012G161700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 130aa MW: 14755.2 Da PI: 5.6091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G161700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00066	2	18	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 + a++L Av+YIk+Lq Gorai.012G161700.1 2 DRATVLGDAVKYIKQLQ 18 5799************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.7E-5	1	28	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDRATVLGDA VKYIKQLQEK VKTPEEQARQ KPMEYVACVK KHQLLIDSNG DFSSWDEHFS 60 APFDEPLPEI EARCCDQSVL ISIHFINSNA MTFGSCALHI TIVAQMDMEF CMTIKELVKK 120 LRLAFIFLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX621868	2e-32	JX621868.1 Gossypium hirsutum clone NBRI_GE68470 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458345.1	7e-77	PREDICTED: transcription factor bHLH25-like
TrEMBL	A0A0D2S3Z7	1e-91	A0A0D2S3Z7_GOSRA; Uncharacterized protein
STRING	Gorai.012G161700.1	2e-92	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G161700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]