PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G124100.1
Common NameB456_012G124100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 332aa    MW: 36852.7 Da    PI: 6.7143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G124100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14133179455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + ErrRR+ri+ +++ L+el+P++      K +Ka+iL  A+++IksL+
  Gorai.012G124100.1 133 LHTISERRRRERIRGKIQALQELMPNC-----NKWDKASILDDAINCIKSLK 179
                         699***********************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-17126188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18127192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.45129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11133178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDPQTSVSEF ISNISGHKDV GESSQNHGDE VLPHSLTIAA LVGQDDYFQN AFVMSSSFQT  60
HTINQNPQGI EFPEEISLEP DSGQSNQRKR KLFELENSKC LQQEIAGVSQ GLEGNQNEQQ  120
QQQQPKQKRR GKLHTISERR RRERIRGKIQ ALQELMPNCN KWDKASILDD AINCIKSLKV  180
QVEMMSMARG AFYRVPYMSQ ALMHMKAGMV GMCFSSRLPT MPPFSEPAGL PLMPGTGTRN  240
LGLPLLQMPF FHSQLPLPPA ATPTMLPNYL TPAALFYYSS QGEAVDTQNI VSTTSIDCQQ  300
IPITIQSHDN SFLGENYLAS SSPSKVPSSY Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KRRGKLHTISERRRR
2129141RGKLHTISERRRR
3137142ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679362.10.0PREDICTED: transcription factor bHLH119-like
RefseqXP_016684584.10.0PREDICTED: transcription factor bHLH119-like
TrEMBLA0A0D2V5P80.0A0A0D2V5P8_GOSRA; Uncharacterized protein
STRINGGorai.012G124100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2193445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-13phytochrome interacting factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]