PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G104800.1

Common Name

B456_012G104800, LOC105780944

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 298aa MW: 33576.2 Da PI: 4.806

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G104800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.6e-31	114	170	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+ve+s+++ ++++itYeg H h Gorai.012G104800.1 114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPRCNAKKQVEKSRDEADTLIITYEGLHLH 170 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.704	108	173	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.7E-29	110	170	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-25	111	170	IPR003657	WRKY domain
SMART	SM00774	4.2E-34	113	172	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	114	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEEGGEKHDW VDDDSQEELV RELLDEESPF FVLSQGTIQP KAITSEEEVS KQLVSNVYSG 60 PRIEDIENAL SSVSNWKDQP QQNTRINSML ERNLSKIESK YTLKVRSCGN GMADDGYKWR 120 KYGQKSIKNS PNPRSYYKCT NPRCNAKKQV EKSRDEADTL IITYEGLHLH FVDPYFPPLS 180 DQPFQHDNNE PTKKPRKAIS ESDESRAFGL PQTMQIQEAT TNNINSAVSL EGCPCPQEVA 240 SEGLLEDVVP WIIRNPFHNS IISSNSTSCS SSQTRSPPVS PSSLSWSPNY NPWPVFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	112	174	13	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031077	0.0	KF031077.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460937.1	0.0	PREDICTED: probable WRKY transcription factor 49
TrEMBL	A0A0D2V4Q2	0.0	A0A0D2V4Q2_GOSRA; Uncharacterized protein
STRING	Gorai.012G104800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9405	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	2e-52	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	Gorai.012G104800.1
Entrez Gene	105780944

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]