PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G075600.1
Common NameB456_012G075600, LOC105780813
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 279aa    MW: 31754.3 Da    PI: 6.9785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G075600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-092671346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         WT+eE +++  a + +G +   +W ++a++++ g+t  +++  ++ 
  Gorai.012G075600.1 26 YWTKEENKRFESALAIYGEDvpdRWMKVAAMIP-GKTVSDVIKQYRE 71
                        5********************************.*******999986 PP
2Myb_DNA-binding431e-13126170347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Gorai.012G075600.1 126 PWTEEEHRRFLMGLMKYGKGDWRNISRNLVVSKTPTQVASHAQKY 170
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9442277IPR017884SANT domain
SMARTSM007173.0E-82375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-52572IPR009057Homeodomain-like
SuperFamilySSF466893.38E-122581IPR009057Homeodomain-like
CDDcd001673.70E-82772No hitNo description
PfamPF002492.6E-82771IPR001005SANT/Myb domain
PROSITE profilePS5129420.291119175IPR017930Myb domain
SuperFamilySSF466892.21E-15121174IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-18122174IPR006447Myb domain, plants
SMARTSM007171.1E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-11123175IPR009057Homeodomain-like
CDDcd001671.14E-9126171No hitNo description
PfamPF002493.3E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
METFFATSFM SNSDWFDQED ISRNPYWTKE ENKRFESALA IYGEDVPDRW MKVAAMIPGK  60
TVSDVIKQYR ELEEDVFDIE SGRIPIPGYL TSSFTFEMVD NHDFEPYRKR SNGAKGPDHE  120
RKKGVPWTEE EHRRFLMGLM KYGKGDWRNI SRNLVVSKTP TQVASHAQKY FQRQLSGGKD  180
KKRPSIHDIT TLSITTPNTG FSDNQSDHVL ALHQKLSSTL QKVDQNNDAS AMALNSSQEG  240
WFTSSQQYLT ASNGLRFQGQ NLYGNGFHGA QPPQSSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1527921176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850428e-59JX585042.1 Gossypium hirsutum clone NBRI_GE18496 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460778.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H76e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2TK880.0A0A0D2TK88_GOSRA; Uncharacterized protein
STRINGGorai.012G075600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.18e-97MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]