PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G028600.1
Common NameB456_012G028600, LOC105780731
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 445aa    MW: 48512.6 Da    PI: 8.6043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G028600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115379127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Gorai.012G028600.1 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79
                        5789*********************97 PP
2zf-CCCH38.81.5e-12100124327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Gorai.012G028600.1 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                         799********************96 PP
3zf-CCCH36.57.9e-12146170327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C +++rtG+Ck+G++CkF+H++
  Gorai.012G028600.1 146 ETECAYYLRTGQCKFGSTCKFHHPQ 170
                         578********************97 PP
4zf-CCCH36.39.3e-12308331427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C+f+++tG Ck+G+ C+F+H++
  Gorai.012G028600.1 308 LECQFYMKTGDCKFGAVCRFHHPR 331
                         58********************96 PP
5zf-CCCH40.73.9e-13351377127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF+H++
  Gorai.012G028600.1 351 PGEPLCIFYSRYGICKFGPSCKFNHPM 377
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5875280IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45878IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35697125IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-697124IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6144171IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4304331IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8308331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5308333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4310332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727350378IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7350377IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10352377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5353377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEFSFGAGIP MSRTPAAGPE GTSLSPSLNQ DGTWQINLRS SETMEPGPYP ERPGEPDCSY  60
YIRTGLCRFG ATCRFNHPPN RKLAITTARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVSLNFLGY PLRPNETECA YYLRTGQCKF GSTCKFHHPQ PTNMMVSLRG  180
SPIYPTFPSP TTSGQQSFLG GLTNWSRASF IPSPRWQGPS SYAPLILPQG MVSVPSWNAY  240
GGQLASVSSS ENLQQTNGNN QIYGTSRPNE SASAGSQALF SQFRSGSAPV GFYALQRENV  300
FPERPGELEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC ILSPIGLPLR PGEPLCIFYS  360
RYGICKFGPS CKFNHPMGVF TFNYSASSPF EAPVHRLLGS SSGSGGINLS SEGLVEAGST  420
KPRRLSLSEN RQLSSSDDSI DTEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460673.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D2THG60.0A0A0D2THG6_GOSRA; Uncharacterized protein
STRINGGorai.012G028600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-176zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]