PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 303aa MW: 34260.1 Da PI: 5.5688

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G013900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	81.2	1.1e-25	129	190	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg +WrKYGqK++ +s +prsY+rCt + gC++ k+v+r ++dp++ eitY g+H+++ Gorai.012G013900.1 129 MEDGQAWRKYGQKKILNSIHPRSYFRCTRKyeqGCRAMKQVQRMEDDPQMYEITYIGTHTCT 190 58************************988889************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-25	120	190	IPR003657	WRKY domain
PROSITE profile	PS50811	20.174	124	187	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-24	126	190	IPR003657	WRKY domain
SMART	SM00774	5.1E-35	129	191	IPR003657	WRKY domain
Pfam	PF03106	2.4E-24	130	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864	Biological Process	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	Biological Process	response to chitin
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGTLSPWPET LSNSKKRVIQ QLVHGQECAT QLQILFHNPS EEGGRLSAEE VLVQNILTSF 60 NHTLSALSCI DSSEVSQNQT TCNDDSPWCE DRRSEGCSES SKRPGSKDKR GCYKRKRDAE 120 AWTVVSATME DGQAWRKYGQ KKILNSIHPR SYFRCTRKYE QGCRAMKQVQ RMEDDPQMYE 180 ITYIGTHTCT DSFRAPQIIP DSESWESQMG SHSQIPTKHH HLNPAAFPSV KQEAKEAAAS 240 DVTDMDCMVW KEIMGGGGGF EYSSEHGMGC DYGDCRAFQY EFLKPAEIEH DYHFDESECL 300 IV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	7e-26	123	189	2	68	OsWRKY45
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00408	DAP	Transfer from AT3G56400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031075	0.0	KF031075.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460911.1	0.0	PREDICTED: probable WRKY transcription factor 70
TrEMBL	A0A0D2TGM3	0.0	A0A0D2TGM3_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5REM6	0.0	A0A2P5REM6_GOSBA; Uncharacterized protein
STRING	Gorai.012G013900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4061	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-50	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Gorai.012G013900.1
Entrez Gene	105780920

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]