PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G226600.1 | ||||||||
Common Name | B456_011G226600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 661aa MW: 75586.4 Da PI: 9.3178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.5e-12 | 497 | 548 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +h +Er+RR+++ + ++ Lr llP+ +K s ++ + Av YI +L Gorai.011G226600.1 497 KKSMHRVIERQRRQEMANLYASLRNLLPPnY---IRGKRSISDQVDGAVSYIMYL 548 6899*************************66...*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 3.4E-7 | 143 | 324 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.7E-8 | 146 | 317 | IPR032675 | Leucine-rich repeat domain, L domain-like |
CDD | cd00083 | 1.46E-9 | 494 | 552 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-13 | 495 | 565 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.205 | 496 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-9 | 497 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-10 | 497 | 564 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0019 | 502 | 554 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MKLRVLKVCI YGQTNFSKRK QLPSNIVLHP EMISKLSRLI ELSIDVDPSD KWWHDSVEEV 60 VKGVCNLEGL RSLCLYLPNY QLLDYTSFIY PSLSCFRFTV GHHKRRTISR VPHEVEAQFT 120 KWDKCLKFVN GENIPFQVRK VLKFTSSFFL DRHENASSLS EFGNENMVML KYCLLVDCNK 180 METIIDGAEV ETVLESLQYL SIHYMKNLRS IWKGPTRSGC MSKLKFLALH TCPKLSYIFS 240 HVLLRNFVNL EEIIVEDCPQ VSSLVSHVPA LPYLKPFLPS LKRLFLLYLP ELVSISNGLS 300 IAPKLEGIGF YDCPKLKVLS KTELSSKALK TIKGEKQWWE DIKWNKIDWE NGPRNLMRIF 360 SPINNEKDVT VQLLEDRNVF EAQQSDTTLC TRKSVDIYAQ QKSQWADCMV KSVPSPCSPT 420 LSSWTQPYLR ITPPLNVKHT RWFSKRQLSN LVSYPSYNKQ NKSSEKCCLA VVSGSRGRQQ 480 KLLASGKREN SNDDDKKKSM HRVIERQRRQ EMANLYASLR NLLPPNYIRG KRSISDQVDG 540 AVSYIMYLKN RIDGLSGKRD ELKKVWGNSS GFHQGMSMSC IEAFPSSVVV RQSLDGVEIV 600 ISDSVGAQAL TLSKVLQQLL EEGLDVVNCV SSRTDASLIH TIKYEVSDMR GVDPSFCWRN 660 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457555.1 | 0.0 | PREDICTED: uncharacterized protein LOC105778412 isoform X1 | ||||
Refseq | XP_012457556.1 | 0.0 | PREDICTED: uncharacterized protein LOC105778412 isoform X1 | ||||
TrEMBL | A0A0D2UWW0 | 0.0 | A0A0D2UWW0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G226600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8020 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G226600.1 |
Publications ? help Back to Top | |||
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