PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 453aa MW: 50017.9 Da PI: 6.4196

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G217200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.7e-10	167	207	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Gorai.011G217200.1 167 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 207 7889************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-8	163	226	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	165	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	167	210	No hit	No description
CDD	cd14708	8.49E-23	167	219	No hit	No description
Pfam	PF00170	7.5E-7	167	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-7	168	211	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.5E-34	249	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MPGFDSQLPV TNILCSEGST IHPFPVSNFG TFDQSVGFRL EDAVNLSGNC AVFDSAKVSR 60 QEVPSDRDLI IGTSDKTPTS FTNYPSTNQV ESPRLQLEKG QETNLVSIPS GNTENWGESN 120 MADGSPKTDI STDADTDEKS QRFDRGKSSI VAVSDSSDRS KSNLDQKTLR RLAQNREAAR 180 KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSMGGN GAMAFDVEYA 240 RWLEEQNRQI NELRTAVNSH ASDAELRIIV DGVMAHYDEI FRLKSNAAKA DVFHLLSGMW 300 KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGIGN LQQSSQQAED ALSQGMEALQ 360 QSLAETLSTG SLGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL 420 TTRQSARALL AIHDYFSRLR ALSSLWLARP RE*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MPGFDSQLPV TNILCSEGST IHPFPVSNFG TFDQSVGFRL EDAVNLSGNC AVFDSAKVSR  60
QEVPSDRDLI IGTSDKTPTS FTNYPSTNQV ESPRLQLEKG QETNLVSIPS GNTENWGESN  120
MADGSPKTDI STDADTDEKS QRFDRGKSSI VAVSDSSDRS KSNLDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSMGGN GAMAFDVEYA  240
RWLEEQNRQI NELRTAVNSH ASDAELRIIV DGVMAHYDEI FRLKSNAAKA DVFHLLSGMW  300
KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGIGN LQQSSQQAED ALSQGMEALQ  360
QSLAETLSTG SLGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL  420
TTRQSARALL AIHDYFSRLR ALSSLWLARP RE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3701	0.0	flower\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48821226	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455191.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Refseq	XP_012455192.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0D2UWL3	0.0	A0A0D2UWL3_GOSRA; Uncharacterized protein
STRING	Gorai.011G217200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-169	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Gorai.011G217200.1
Entrez Gene	105776821

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]