PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 360aa MW: 40532.2 Da PI: 6.1836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G112200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	5.8e-11	74	109	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k +rr+++NReAAr+sR+RKka++++Le+ +L Gorai.011G112200.3 74 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLI 109 799**************************8554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-7	71	153	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.726	73	115	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-8	74	105	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.02E-7	75	115	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-8	76	115	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.1E-30	162	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MESQFVPSRR MDIYDPIQQI GMWGESFNAN SNLHASVSMI AEMDNKISNE SETASHEMLA 60 PSNKYEQEAT KRIDKIQRRL AQNREAARKS RLRKKAYVQQ LENSRLKLIQ LEQELVQMKQ 120 QGVYMGGGLV GGNLGFSAPV KSGIAAFETE YARWMDEQSK QICGLRAALN AEISDTDLQM 180 LVETGMKHYS ELFRMKSTAA KSDVFYVMSG MWKTSAEQFF SWIGGFRPSE LLKVLLPQLD 240 SLTEQQFFEV CNLKQSCQQA EDALSQGMEK LREIVSVTVA DGQLGEGSYS SQVTTAMEKV 300 EALVSFVNQA DHIRQETLQQ MSRILTIRQT ARGLLALGEY FERLRALSSL WATCAREPA*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MESQFVPSRR MDIYDPIQQI GMWGESFNAN SNLHASVSMI AEMDNKISNE SETASHEMLA  60
PSNKYEQEAT KRIDKIQRRL AQNREAARKS RLRKKAYVQQ LENSRLKLIQ LEQELVQMKQ  120
QGVYMGGGLV GGNLGFSAPV KSGIAAFETE YARWMDEQSK QICGLRAALN AEISDTDLQM  180
LVETGMKHYS ELFRMKSTAA KSDVFYVMSG MWKTSAEQFF SWIGGFRPSE LLKVLLPQLD  240
SLTEQQFFEV CNLKQSCQQA EDALSQGMEK LREIVSVTVA DGQLGEGSYS SQVTTAMEKV  300
EALVSFVNQA DHIRQETLQQ MSRILTIRQT ARGLLALGEY FERLRALSSL WATCAREPA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457230.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457231.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457232.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457234.1	0.0	PREDICTED: transcription factor TGA4-like
Swissprot	Q39162	1e-170	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0D2RKM1	0.0	A0A0D2RKM1_GOSRA; Uncharacterized protein
STRING	Gorai.011G112200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-166	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Gorai.011G112200.3
Entrez Gene	105778150

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]