PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G104000.1 | ||||||||
Common Name | B456_011G104000, LOC105778571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 236aa MW: 24390.1 Da PI: 8.5941 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 7.1e-38 | 26 | 85 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt GG+lr++PvGgg+rkn k+s Gorai.011G104000.1 26 QEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTLGGTLRDIPVGGGTRKNAKRS 85 6789****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.1E-32 | 27 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-22 | 33 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MPSDSGDPNR RLTKALNSGA PPPPGQEQLP CPRCDSTNTK FCYYNNYNFS QPRHFCKSCR 60 RYWTLGGTLR DIPVGGGTRK NAKRSRTTHS TFISSSTNAG ATTTATTTSY NDFQLPATQV 120 LLPVSGNQGS SGVVGESKGN GFASLLNPQG PGFLALSGFG LGIVPALEDV GFGLGRGMWP 180 FSMGDGAVGG GGNGGAATGM GNPWQFEGAE AGPVGAGDCF SWPELAISTP GNWLK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457746.1 | 1e-171 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 2e-58 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A0D2US32 | 1e-169 | A0A0D2US32_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G104000.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 1e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G104000.1 |
Entrez Gene | 105778571 |
Publications ? help Back to Top | |||
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