PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G101700.1
Common NameB456_011G101700, LOC105778694
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 81aa    MW: 9090.2 Da    PI: 9.6955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G101700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-101558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a +++ ++   +W+ Ia+ +g g++ +++k+++
  Gorai.011G101700.1 15 SWTAKQNKLFEKALAKYDKDtpdRWHNIAKAVG-GKSVEEVKLHY 58
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-51164IPR009057Homeodomain-like
PROSITE profilePS5129312.4681166IPR017884SANT domain
SMARTSM007179.9E-101264IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-131469IPR009057Homeodomain-like
CDDcd001672.27E-81558No hitNo description
PfamPF002492.6E-81558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASNSLTSSR TSGSSWTAKQ NKLFEKALAK YDKDTPDRWH NIAKAVGGKS VEEVKLHYEI  60
LVRDLKDIES GRYPYPYPTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29676171RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457904.18e-54PREDICTED: protein RADIALIS-like 3
RefseqXP_016678633.18e-54PREDICTED: protein RADIALIS-like 3
RefseqXP_017648656.18e-54PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B0PE522e-52A0A0B0PE52_GOSAR; DnaJ subfamily C member 1
TrEMBLA0A0D2VFN52e-52A0A0D2VFN5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IQD32e-52A0A1U8IQD3_GOSHI; protein RADIALIS-like 3
TrEMBLA0A2P5XYZ42e-52A0A2P5XYZ4_GOSBA; Uncharacterized protein
STRINGGorai.011G101700.13e-53(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-30RAD-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]