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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.011G058900.1 |
Common Name | B456_011G058900, LOC105777609 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 546aa MW: 60050.1 Da PI: 5.8589 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.011G058900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 269.7 | 9.3e-83 | 162 | 537 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
++lL cA+a+++g+l+++q+lL l+elas++gd+++Rla + ++AL ++l++s+ + +p + ++++ + +l f+evsP++
Gorai.011G058900.1 162 EQLLNPCATAITTGNLTRVQHLLYVLNELASSTGDANHRLADHGLRALTHHLSSSSA----STAPVTFASTEPKFFQRSLLKFYEVSPWFA 248
689**************************************************9332....233444443445555556666********* PP
GRAS 93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfA 169
f + +aN Il+ +++e + +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp +RiT+v++ +++ + +rL fA
Gorai.011G058900.1 249 FPNTIANASILQILAQEpdkpRNLHILDIGVSHGVQWPTLLEALSRRPgGPPPVVRITVVAATAENnqitdtpfsIGPPGHDFYSRLPGFA 339
*****************9998999************************55667*******997777888888887777889999******* PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerf 257
+++++++++n l + ++ l+ + ++ ++gE+l+V+ +++lh+l ++ +++r+e+Lk+++sl+Pk v+++e+++d++ + +F+++f
Gorai.011G058900.1 340 KSMNINLQINRLENHPIQHLNAQIINNSHGETLIVCAQFRLHHLN---HNGPDQRTEFLKVLRSLEPKGVILSENNMDCSCSscgDFATGF 427
***********9999*****************************8...55556678********************9984433459***** PP
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
++ +ey+++++ds+++ + + r + Er++++ e+ ++++++g++ +e +ekW er++ +GF++ ++e+a + a++llrk++ ++
Gorai.011G058900.1 428 SRRVEYVWKFLDSTSSAF----KGRESEERRVMEGEAAKALTNQGEM----NEGKEKWYERMQGVGFRAEVFGEDAIDGARALLRKYDsNW 510
**************7775....677777777778889********99....9************************************999 PP
GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
++ vee++g++ l Wk++p+ ++S W+
Gorai.011G058900.1 511 EMIVEEKEGCVGLWWKGQPVSFCSLWK 537
9*************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042446 | Biological Process | hormone biosynthetic process |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MTLEESAEPN PSQDHILDWL EDSASLLPSF LDDPYSPGDI SGYEWWDPNH DFGQDLITIG 60 AAAASINSPA IAAAVSNVDA GLVQSDSAVV NPPVPLSSSK RRRPTDSIVP RMSKKSSNGK 120 NDENEDGKAG VEEVVGNKRS AGNKRNKSSG NNGNNKEGRW AEQLLNPCAT AITTGNLTRV 180 QHLLYVLNEL ASSTGDANHR LADHGLRALT HHLSSSSAST APVTFASTEP KFFQRSLLKF 240 YEVSPWFAFP NTIANASILQ ILAQEPDKPR NLHILDIGVS HGVQWPTLLE ALSRRPGGPP 300 PVVRITVVAA TAENNQITDT PFSIGPPGHD FYSRLPGFAK SMNINLQINR LENHPIQHLN 360 AQIINNSHGE TLIVCAQFRL HHLNHNGPDQ RTEFLKVLRS LEPKGVILSE NNMDCSCSSC 420 GDFATGFSRR VEYVWKFLDS TSSAFKGRES EERRVMEGEA AKALTNQGEM NEGKEKWYER 480 MQGVGFRAEV FGEDAIDGAR ALLRKYDSNW EMIVEEKEGC VGLWWKGQPV SFCSLWKLDV 540 KVEES*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |