PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G219200.2
Common NameB456_010G219200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 243aa    MW: 27421.6 Da    PI: 4.5527
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G219200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93.1e-111081541659
                         TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +g    +sY+rC+++   gC++ k+v+r ++d+++ +itY g+H+++
  Gorai.010G219200.2 108 RGCYKRKSYFRCSHKhdqGCSAIKQVQRMEDDTQTYHITYIGTHTCR 154
                         5666779*******99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-11105154IPR003657WRKY domain
SMARTSM007742.2E-8105155IPR003657WRKY domain
PROSITE profilePS5081110.556105151IPR003657WRKY domain
PfamPF031065.9E-11108154IPR003657WRKY domain
SuperFamilySSF1182901.11E-10108154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDTLYPWPEP ETLSSNKKRV IQQLAEGQQC ATELQVIVLQ NNKPSQQAEE LVQKILWSFN  60
QTISMLSEAG HHDEVISQNQ ATCNDDCKSQ DSSESSKRSL SAFTKDKRGC YKRKSYFRCS  120
HKHDQGCSAI KQVQRMEDDT QTYHITYIGT HTCRGQYPSM ATPRIDRLSP ILKLESEEQT  180
TTPSDVTDLD SMTMWTDVMM GGVGFEADAV SNMYSCTEIT CLDLEPVELE NGLQFDYPDF  240
AS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.26410.0seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310910.0KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.
GenBankKF6697740.0KF669774.1 Gossypium hirsutum WRKY transcription factor 88 (WRKY88) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452261.11e-169PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D2UIZ10.0A0A0D2UIZ1_GOSRA; Uncharacterized protein
STRINGGorai.010G219200.11e-168(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-23WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]