PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G219200.1
Common NameB456_010G219200, LOC105774341
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 328aa    MW: 37139.8 Da    PI: 6.2828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G219200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.3e-25179239259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK++ +s++prsY+rC+++   gC++ k+v+r ++d+++ +itY g+H+++
  Gorai.010G219200.1 179 EDGHAWRKYGQKNILNSKHPRSYFRCSHKhdqGCSAIKQVQRMEDDTQTYHITYIGTHTCR 239
                         8***************************99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-25164239IPR003657WRKY domain
PROSITE profilePS5081119.611173236IPR003657WRKY domain
SuperFamilySSF1182906.8E-24175239IPR003657WRKY domain
SMARTSM007741.5E-35178240IPR003657WRKY domain
PfamPF031061.4E-24179239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MILSLLLLSP TYTHIHIYIY IYIYIHTLTK TGSEATNKSQ RGVFSGGVIR TMDTLYPWPE  60
PETLSSNKKR VIQQLAEGQQ CATELQVIVL QNNKPSQQAE ELVQKILWSF NQTISMLSEA  120
GHHDEVISQN QATCNDDCKS QDSSESSKRS LSAFTKDKRG CYKRKRFAQT STVVSDKIED  180
GHAWRKYGQK NILNSKHPRS YFRCSHKHDQ GCSAIKQVQR MEDDTQTYHI TYIGTHTCRG  240
QYPSMATPRI DRLSPILKLE SEEQTTTPSD VTDLDSMTMW TDVMMGGVGF EADAVSNMYS  300
CTEITCLDLE PVELENGLQF DYPDFAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-26171239169OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.26410.0seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310910.0KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452261.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D2RBT40.0A0A0D2RBT4_GOSRA; Uncharacterized protein
STRINGGorai.010G219200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-43WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]