PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G124200.1
Common NameB456_010G124200, LOC105774083
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 329aa    MW: 35950.8 Da    PI: 4.3255
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G124200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.3e-15161217359
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          lkr rrk +NRe+ArrsR+RK+++++eLe  +++L +eN++L k+l +  +++  +
  Gorai.010G124200.1 161 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQAEQLRGENDSLFKQLTNAHQLIRDV 217
                         58******************************************9999988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-11158210No hitNo description
SMARTSM003384.0E-14159223IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955161207IPR004827Basic-leucine zipper domain
PfamPF001701.5E-12161213IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11162213No hitNo description
CDDcd147022.39E-18164212No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKRSASELAL EEFSRNTMST TTIPAPSAFP DFALHPPIAH LSNSFHFTEF SGDAAELSPQ  60
THVLLSQTLT SHLDSQSSFC GNESWGSTVC EGNNSNYRSR ENEVRGATTL SSDHDPSDDD  120
DDDVEEEEDD DDDEDEEGGE GEGEVEEADA GQSEQSLDPS HLKRLRRKLS NRESARRSRK  180
RKQEQLAELE FQAEQLRGEN DSLFKQLTNA HQLIRDVGTN NRVLTSNVQA LRHKVKLAED  240
MLAGGSFTCG LNQLVQSHLT SQQPIATNNH NLGRVVNVSP TITVQGDSSS YAGFTDMGNS  300
PNLGLPTLDF TNSNQNNIGI GGDAMSWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168LKRLRRKL
2165181RRKLSNRESARRSRKRK
3175181RRSRKRK
4175182RRSRKRKQ
5177182SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14030.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641831e-115JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451878.10.0PREDICTED: basic leucine zipper 9
TrEMBLA0A0D2R6T70.0A0A0D2R6T7_GOSRA; Uncharacterized protein
STRINGGorai.010G124200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-39basic leucine zipper 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]