PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G010000.1
Common NameB456_010G010000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 96aa    MW: 10760.3 Da    PI: 9.9262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G010000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08652347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         WT+   +l+ +a   + ++   +W   a+ +g g+t +++k +++++
  Gorai.010G010000.1  6 TWTPKQNKLFENALVIYNKEspdRWQNLANAVG-GKTVEEVKMHYYNL 52
                        7*****************99*************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.682257IPR017884SANT domain
SMARTSM007171.2E-6355IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-12561IPR009057Homeodomain-like
CDDcd001672.16E-6653No hitNo description
Gene3DG3DSA:1.10.10.607.0E-4656IPR009057Homeodomain-like
PfamPF002495.4E-6652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGSSSTWTPK QNKLFENALV IYNKESPDRW QNLANAVGGK TVEEVKMHYY NLVEDIKQIE  60
SGNVPLPPYG KKPGGGSKGY NCMDSVQRMR NLRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27295693RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728999.17e-60PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D2R0751e-64A0A0D2R075_GOSRA; Uncharacterized protein
STRINGGorai.010G010000.12e-65(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-27RAD-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]