PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 251aa MW: 27056.2 Da PI: 7.8807

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G279200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.5	1.4e-16	173	209	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gorai.009G279200.2 173 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 209 ***99999**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	5.9E-8	75	110	IPR010399	Tify domain
PROSITE profile	PS51320	12.48	75	110	IPR010399	Tify domain
Pfam	PF06200	2.9E-9	79	109	IPR010399	Tify domain
Pfam	PF06203	1.4E-10	141	172	IPR010402	CCT domain
PROSITE profile	PS51017	8.641	141	183	IPR010402	CCT domain
SMART	SM00401	2.1E-14	167	220	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.831	167	228	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.8E-12	170	220	No hit	No description
CDD	cd00202	1.65E-14	172	219	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.5E-15	172	213	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	173	200	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.7E-14	173	209	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MYGQSQPMNV PAPVTSSGVD VRDDVSASAS VDNHQNVSYD AHPLNNGVGV EGVHTDPIYA 60 TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELTSGPHGV 120 EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRCTHCGISS 180 NSTPMMRRGP SGPRSLCNAC GLFWANKGTL RDLPKKTRDH SVPPVEHRDS EANDSDSGTA 240 IPTQSNIVSV *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447633.1	1e-171	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-57	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A0D2S9E5	0.0	A0A0D2S9E5_GOSRA; Uncharacterized protein
STRING	Gorai.009G279200.1	1e-171	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	3e-59	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Gorai.009G279200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]