PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 283aa MW: 30616.9 Da PI: 7.827

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G279200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.3	1.6e-16	205	241	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gorai.009G279200.1 205 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 241 ***99999**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	5.9E-8	75	110	IPR010399	Tify domain
PROSITE profile	PS51320	12.48	75	110	IPR010399	Tify domain
Pfam	PF06200	3.4E-9	79	109	IPR010399	Tify domain
PROSITE profile	PS51017	12.471	141	183	IPR010402	CCT domain
Pfam	PF06203	6.1E-16	141	183	IPR010402	CCT domain
PROSITE profile	PS50114	10.646	199	260	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.1E-15	199	252	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.98E-12	203	252	No hit	No description
CDD	cd00202	3.61E-14	204	251	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-15	204	245	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	205	232	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.0E-14	205	241	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYGQSQPMNV PAPVTSSGVD VRDDVSASAS VDNHQNVSYD AHPLNNGVGV EGVHTDPIYA 60 TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELTSGPHGV 120 EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF 180 TSSKKSDRTD SCSTQDNDNL PDSSCTHCGI SSNSTPMMRR GPSGPRSLCN ACGLFWANKG 240 TLRDLPKKTR DHSVPPVEHR DSEANDSDSG TAIPTQSNIV SV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447633.1	0.0	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	9e-74	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A0D2TSS4	0.0	A0A0D2TSS4_GOSRA; Uncharacterized protein
STRING	Gorai.009G279200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5006	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	2e-75	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Gorai.009G279200.1
Entrez Gene	105770829

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]